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HBV Target gene Detail Information

> POMT2 Gene Search Result


Gene Information
Gene Name POMT2
Gene ID 29954
Gene Full Name protein O-mannosyltransferase 2
Gene Alias LGMD2N; MDDGA2; MDDGB2; MDDGC2; LGMDR14
Transcripts ENSG00000009830
Virus HBV
Gene Type protein coding
HPA Location Info Nucleoplasm;Cytosol;Nucleoli;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Disease related genes, Enzymes, Potential drug targets, Predicted membrane proteins
Uniport_ID Q9UKY4
HGNC ID HGNC:19743
VEGA ID OTTHUMG00000171556
OMIM ID 607439
String ID 9606.ENSP00000261534
PharmGKB ID PA134980627
Target gene [POMT2] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1004036 chr14 9 58 29 96 View
1008391 chr14 16 1 4 21 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of POMT2 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
POMT2 expression: Low -> High
Lollipop of POMT2 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of POMT2 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of POMT2 expression and immune infiltrating cell level correlation result in HBV+ samples
POMT2 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).