HIV Target gene Detail Information

> PMS1 Gene Search Result

Gene Information

Gene Name	PMS1
Gene ID	5378
Gene Full Name	PMS1 homolog 1, mismatch repair system component
Gene Alias	MLH2; PMSL1; hPMS1; HNPCC3
Transcripts	ENSG00000064933
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nuclear bodies;Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	P54277
HGNC ID	HGNC:9121
VEGA ID	OTTHUMG00000132664
OMIM ID	600258
String ID	9606.ENSP00000406490
PharmGKB ID	PA33447

Target gene [PMS1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4008306	chr2	14	1		15	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of PMS1 expression and immune infiltrating cell level correlation result in HIV+ samples
PMS1 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of PMS1 expression and immune infiltrating cell level correlation result in HIV+ samples
PMS1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).