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HBV Target gene Detail Information

> PHF21A Gene Search Result


Gene Information
Gene Name PHF21A
Gene ID 51317
Gene Full Name PHD finger protein 21A
Gene Alias BHC80; BM-006
Transcripts ENSG00000135365
Virus HBV
Gene Type protein coding
HPA Location Info Nucleoplasm;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q96BD5
HGNC ID HGNC:24156
VEGA ID OTTHUMG00000167038
OMIM ID 608325
String ID 9606.ENSP00000398824
PharmGKB ID PA134977844
Target gene [PHF21A] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1006237 chr11 20 16 5 41 View
1008332 chr11 13 8 21 View
1008360 chr11 13 8 21 View
1008543 chr11 13 7 20 View
1016739 chr11 1 1 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of PHF21A expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
PHF21A expression: Low -> High
Lollipop of PHF21A expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of PHF21A expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of PHF21A expression and immune infiltrating cell level correlation result in HBV+ samples
PHF21A expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).