HIV Target gene Detail Information

> PHF19 Gene Search Result

Gene Information

Gene Name	PHF19
Gene ID	26147
Gene Full Name	PHD finger protein 19
Gene Alias	PCL3; MTF2L1; TDRD19B
Transcripts	ENSG00000119403
Virus	HIV
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q5T6S3
HGNC ID	HGNC:24566
VEGA ID	OTTHUMG00000020577
OMIM ID	609740
String ID	9606.ENSP00000483946
PharmGKB ID	PA134911501

Target gene [PHF19] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4011937	chr9	4	2		6	View
4014565	chr9	2			2	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of PHF19 expression and immune infiltrating cell level correlation result in HIV+ samples
PHF19 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of PHF19 expression and immune infiltrating cell level correlation result in HIV+ samples
PHF19 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).