HBV Target gene Detail Information

> PDZRN3 Gene Search Result

Gene Information

Gene Name	PDZRN3
Gene ID	23024
Gene Full Name	PDZ domain containing ring finger 3
Gene Alias	LNX3; SEMCAP3; SEMACAP3
Transcripts	ENSG00000121440
Virus	HBV
Gene Type	protein coding
HPA Location Info	Cytosol;Nucleoplasm;
HPA Protein Class Info	Enzymes, Predicted intracellular proteins
Uniport_ID	Q9UPQ7
HGNC ID	HGNC:17704
VEGA ID	OTTHUMG00000158865
OMIM ID	609729
String ID	9606.ENSP00000263666
PharmGKB ID	PA134931098

Target gene [PDZRN3] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1007250	chr3	5	9	15	29	View
1009697	chr3	7	7	1	15	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
LIHC (TCGA)	Liver hepatocellular carcinoma	424	Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC
HeatMap of cell type fractions in all samples	Lollipop of PDZRN3 expression and immune infiltrating cell level correlation result in HBV+ samples
PDZRN3 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).