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HBV Target gene Detail Information

> PCMT1 Gene Search Result


Gene Information
Gene Name PCMT1
Gene ID 5110
Gene Full Name protein-L-isoaspartate (D-aspartate) O-methyltransferase
Gene Alias PIMT
Transcripts ENSG00000120265
Virus HBV
Gene Type protein coding
HPA Location Info Cytosol;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Enzymes, Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID P22061
HGNC ID HGNC:8728
VEGA ID OTTHUMG00000015794
OMIM ID 176851
String ID 9606.ENSP00000356354
Drugbank ID BE0001144
PharmGKB ID PA262
Target gene [PCMT1] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1003265 chr6 86 43 22 151 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of PCMT1 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
PCMT1 expression: Low -> High
Lollipop of PCMT1 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of PCMT1 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of PCMT1 expression and immune infiltrating cell level correlation result in HBV+ samples
PCMT1 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).