HBV Target gene Detail Information

> ODF3 Gene Search Result

Gene Information

Gene Name	ODF3
Gene ID	113746
Gene Full Name	outer dense fiber of sperm tails 3
Gene Alias	CT135; TISP50; SHIPPO1
Transcripts	ENSG00000177947
Virus	HBV
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q96PU9
HGNC ID	HGNC:19905
VEGA ID	OTTHUMG00000119073
OMIM ID	608356
String ID	9606.ENSP00000325868
PharmGKB ID	PA134952791

Target gene [ODF3] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1402498	chr11	401	227	36	664	View
1402499	chr11	407	278	24	709	View
1402500	chr11	385	219	42	646	View
1403799	chr11	404	268	24	696	View
1403800	chr11	391	217	38	646	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE114783 (GEO)	Chronic HBV (CHB) infection	36	Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO)	Hepatocellular carcinoma	36	Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO)	Liver cirrhosis	36	Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA)	Liver hepatocellular carcinoma	424	Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783
HeatMap of cell type fractions in all samples	Lollipop of ODF3 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
ODF3 expression: Low -> High
Lollipop of ODF3 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples	Lollipop of ODF3 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples


> Dataset: LIHC
HeatMap of cell type fractions in all samples	Lollipop of ODF3 expression and immune infiltrating cell level correlation result in HBV+ samples
ODF3 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).