HTLV1 Target gene Detail Information

> NRCAM Gene Search Result

Gene Information

Gene Name	NRCAM
Gene ID	4897
Gene Full Name	neuronal cell adhesion molecule
Transcripts	ENSG00000091129
Virus	HTLV1
Gene Type	protein coding
HPA Location Info	Nucleoplasm;Plasma membrane;Vesicles;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Gene Function	Suppressor gene
Uniport_ID	Q92823
HGNC ID	HGNC:7994
VEGA ID	OTTHUMG00000154973
OMIM ID	601581
String ID	9606.ENSP00000368314
PharmGKB ID	PA31773

Target gene [NRCAM] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6029941	chr7	1			1	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of NRCAM expression and immune infiltrating cell level correlation result in HTLV1+ samples
NRCAM expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of NRCAM expression and immune infiltrating cell level correlation result in HTLV1+ samples
NRCAM expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of NRCAM expression and immune infiltrating cell level correlation result in HTLV1+ samples
NRCAM expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).