HIV Target gene Detail Information

> NLRC4 Gene Search Result

Gene Information

Gene Name	NLRC4
Gene ID	58484
Gene Full Name	NLR family CARD domain containing 4
Gene Alias	CLAN; IPAF; AIFEC; CLAN1; CLANA; CLANB; CLANC; CLAND; FCAS4; CARD12; CLR2.1
Transcripts	ENSG00000091106
Virus	HIV
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Disease related genes, Plasma proteins, Predicted intracellular proteins
Uniport_ID	Q9NPP4
HGNC ID	HGNC:16412
VEGA ID	OTTHUMG00000152107
OMIM ID	606831
String ID	9606.ENSP00000385090
PharmGKB ID	PA162397671

Target gene [NLRC4] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4008010	chr2	4	10	3	17	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of NLRC4 expression and immune infiltrating cell level correlation result in HIV+ samples
NLRC4 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of NLRC4 expression and immune infiltrating cell level correlation result in HIV+ samples
NLRC4 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).