HTLV1 Target gene Detail Information

> NGF Gene Search Result

Gene Information

Gene Name	NGF
Gene ID	4803
Gene Full Name	nerve growth factor
Gene Alias	NGFB; HSAN5; Beta-NGF
Transcripts	ENSG00000134259
Virus	HTLV1
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Cancer-related genes, Candidate cardiovascular disease genes, Disease related genes, Plasma proteins, Predicted secreted proteins, RAS pathway related proteins
Uniport_ID	P01138
HGNC ID	HGNC:7808
VEGA ID	OTTHUMG00000011880
OMIM ID	162030
String ID	9606.ENSP00000358525
Drugbank ID	BE0001094
PharmGKB ID	PA162397475

Target gene [NGF] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6008471	chr1	27	16	2	45	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of NGF expression and immune infiltrating cell level correlation result in HTLV1+ samples
NGF expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of NGF expression and immune infiltrating cell level correlation result in HTLV1+ samples
NGF expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).