HPV Target gene Detail Information

> NGDN Gene Search Result

Gene Information

Gene Name	NGDN
Gene ID	25983
Gene Full Name	neuroguidin
Gene Alias	NGD; LCP5; CANu1; lpd-2; C14orf120
Transcripts	ENSG00000129460
Virus	HPV
Gene Type	protein coding
HPA Location Info	Mitochondria;Nucleoli;Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q8NEJ9
HGNC ID	HGNC:20271
VEGA ID	OTTHUMG00000171501
OMIM ID	610777
String ID	9606.ENSP00000386134
PharmGKB ID	PA134957933

Target gene [NGDN] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5400152	chr14	30	3		33	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE40774 (GEO)	Head and neck squamous cell carcinoma	134	Head and neck Squamous cell carcinomas GLOTTIC LARYNX (EBV-)(2), Head and neck Squamous cell carcinomas HYPOPHARYNX (EBV-)(9), Head and neck Squamous cell carcinomas ORAL CAVITY (EBV-)(23), Head and neck Squamous cell carcinomas ORAL CAVITY (EBV+)(2), Head and neck Squamous cell carcinomas OROPHARYNX (EBV-)(22), Head and neck Squamous cell carcinomas OROPHARYNX (EBV+)(54), Head and neck Squamous cell carcinomas OTHER (EBV+)(1), Head and neck Squamous cell carcinomas SUBGLOTTIC LARYNX (EBV-)(1), Head and neck Squamous cell carcinomas SUPRAGLOTTIC (EBV-)(19), Squamous cell carcinomas SUPRAGLOTTIC (EBV+)(1)
GSE138080 (GEO)	Cervical intraepithelial neoplasia	25	Normal (10), Cervical intraepithelial neoplasia (HPV+)(15)
HNSC (TCGA)	Head and Neck squamous cell carcinoma	566	Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE40774
HeatMap of cell type fractions in all samples	Lollipop of NGDN expression and immune infiltrating cell level correlation result in HPV+ samples
NGDN expression: Low -> High

> Dataset: GSE138080
HeatMap of cell type fractions in all samples	Lollipop of NGDN expression and immune infiltrating cell level correlation result in HPV+ samples
NGDN expression: Low -> High

> Dataset: HNSC
HeatMap of cell type fractions in all samples	Lollipop of NGDN expression and immune infiltrating cell level correlation result in HPV+ samples
NGDN expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).