HIV Target gene Detail Information

> NEK1 Gene Search Result

Gene Information

Gene Name	NEK1
Gene ID	4750
Gene Full Name	NIMA related kinase 1
Gene Alias	ALS24; SRPS2; SRTD6; SRPS2A; NY-REN-55
Transcripts	ENSG00000137601
Virus	HIV
Gene Type	protein coding
HPA Location Info	Cytosol;Centriolar satellite;Nucleoplasm;
HPA Protein Class Info	Disease related genes, Enzymes, Potential drug targets, Predicted intracellular proteins
Uniport_ID	Q96PY6
HGNC ID	HGNC:7744
VEGA ID	OTTHUMG00000160963
OMIM ID	604588
String ID	9606.ENSP00000424757
Drugbank ID	BE0009450
PharmGKB ID	PA31545

Target gene [NEK1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4013001	chr4	2	2		4	View
4014486	chr4	2			2	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of NEK1 expression and immune infiltrating cell level correlation result in HIV+ samples
NEK1 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of NEK1 expression and immune infiltrating cell level correlation result in HIV+ samples
NEK1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).