HIV Target gene Detail Information

> NDE1 Gene Search Result

Gene Information

Gene Name	NDE1
Gene ID	54820
Gene Full Name	nudE neurodevelopment protein 1
Gene Alias	NDE; LIS4; MHAC; NUDE; NUDE1; HOM-TES-87
Transcripts	ENSG00000275911
Virus	HIV
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Disease related genes, Predicted intracellular proteins
Uniport_ID	Q9NXR1
HGNC ID	HGNC:17619
VEGA ID	OTTHUMG00000191104
OMIM ID	609449
String ID	9606.ENSP00000379643
PharmGKB ID	PA128394673

Target gene [NDE1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000242	chr16	294	262	104	660	View
4005663	chr16	27	3		30	View
4007662	chr16	15	3		18	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of NDE1 expression and immune infiltrating cell level correlation result in HIV+ samples
NDE1 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of NDE1 expression and immune infiltrating cell level correlation result in HIV+ samples
NDE1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).