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HBV Target gene Detail Information

> NCALD Gene Search Result


Gene Information
Gene Name NCALD
Gene ID 83988
Gene Full Name neurocalcin delta
Transcripts ENSG00000104490
Virus HBV
Gene Type protein coding
HPA Location Info
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID P61601
HGNC ID HGNC:7655
VEGA ID OTTHUMG00000164876
OMIM ID 606722
String ID 9606.ENSP00000379256
PharmGKB ID PA31458
Target gene [NCALD] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1004837 chr8 37 29 2 68 View
1010183 chr8 1 12 13 View
1011917 chr8 5 3 8 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of NCALD expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
NCALD expression: Low -> High
Lollipop of NCALD expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of NCALD expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of NCALD expression and immune infiltrating cell level correlation result in HBV+ samples
NCALD expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).