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HIV Target gene Detail Information

> NBPF20 Gene Search Result


Gene Information
Gene Name NBPF20
Gene ID 100288142
Gene Full Name NBPF member 20
Transcripts ENSG00000162825
Virus HIV
Gene Type protein coding
HPA Location Info Nuclear bodies;Nucleoplasm;
HPA Protein Class Info Predicted intracellular proteins
HGNC ID HGNC:32000
VEGA ID OTTHUMG00000042439
OMIM ID 614007
PharmGKB ID PA142671279
Target gene [NBPF20] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4008107 chr1 13 3 16 View
4008108 chr1 15 1 16 View
4011124 chr1 7 7 View
4013134 chr1 4 4 View
4013135 chr1 4 4 View
4014303 chr1 2 2 View
4015014 chr1 1 1 View
4016121 chr1 0 View
4016122 chr1 0 View
4016124 chr1 0 View
4016551 chr1 0 View
4016552 chr1 0 View
4016711 chr1 0 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO) HIV-infected disease 44 HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of NBPF20 expression and immune infiltrating cell level correlation result in HIV+ samples
NBPF20 expression: Low -> High

> Dataset: GSE50834

HeatMap of cell type fractions in all samples Lollipop of NBPF20 expression and immune infiltrating cell level correlation result in HIV+ samples
NBPF20 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).