HIV Target gene Detail Information

> NBPF10 Gene Search Result


Gene Information
Gene Name NBPF10
Gene ID 100132406
Gene Full Name NBPF member 10
Gene Alias AB6; AG1; NBPF9
Transcripts ENSG00000271425
Virus HIV
Gene Type protein coding
HPA Location Info Nuclear bodies;Nucleoplasm;
HPA Protein Class Info Cancer-related genes, Predicted intracellular proteins
HGNC ID HGNC:31992
VEGA ID OTTHUMG00000013757
OMIM ID 614000
String ID 9606.ENSP00000463957
PharmGKB ID PA142671290
Target gene [NBPF10] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4001564 chr1 150 150 View
4005903 chr1 8 20 28 View
4009109 chr1 2 10 12 View
4011545 chr1 6 6 View
4013548 chr1 2 1 3 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE50834 (GEO) HIV-infected disease 44 HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE50834

HeatMap of cell type fractions in all samples Lollipop of NBPF10 expression and immune infiltrating cell level correlation result in HIV+ samples
NBPF10 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).