HIV Target gene Detail Information

> MSI2 Gene Search Result

Gene Information

Gene Name	MSI2
Gene ID	124540
Gene Full Name	musashi RNA binding protein 2
Gene Alias	MSI2H
Transcripts	ENSG00000153944
Virus	HIV
Gene Type	protein coding
HPA Location Info	Cytosol;
HPA Protein Class Info	Cancer-related genes, Disease related genes, Predicted intracellular proteins
Uniport_ID	Q96DH6
HGNC ID	HGNC:18585
VEGA ID	OTTHUMG00000178398
OMIM ID	607897
String ID	9606.ENSP00000284073
PharmGKB ID	PA38590

Target gene [MSI2] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4001131	chr17	137	26	45	208	View
4011065	chr17	7			7	View
4016250	chr17				0	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of MSI2 expression and immune infiltrating cell level correlation result in HIV+ samples
MSI2 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of MSI2 expression and immune infiltrating cell level correlation result in HIV+ samples
MSI2 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).