HIV Target gene Detail Information

> MSH2 Gene Search Result


Gene Information
Gene Name MSH2
Gene ID 4436
Gene Full Name mutS homolog 2
Gene Alias FCC1; COCA1; HNPCC; LCFS2; hMSH2; HNPCC1
Transcripts ENSG00000095002
Virus HIV
Gene Type protein coding
HPA Location Info Nucleoplasm;Vesicles;
HPA Protein Class Info Cancer-related genes, Disease related genes, Plasma proteins, Predicted intracellular proteins
Gene Function Suppressor gene
Uniport_ID P43246
HGNC ID HGNC:7325
VEGA ID OTTHUMG00000128861
OMIM ID 609309
String ID 9606.ENSP00000233146
PharmGKB ID PA31133
Target gene [MSH2] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4006237 chr2 24 2 26 View

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).