HTLV1 Target gene Detail Information

> MRPS30 Gene Search Result

Gene Information

Gene Name	MRPS30
Gene ID	10884
Gene Full Name	mitochondrial ribosomal protein S30
Gene Alias	PAP; PDCD9; S30mt; MRP-S30
Transcripts	ENSG00000112996
Virus	HTLV1
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Predicted intracellular proteins, Ribosomal proteins
Uniport_ID	Q9NP92
HGNC ID	HGNC:8769
VEGA ID	OTTHUMG00000096967
OMIM ID	611991
String ID	9606.ENSP00000424328
PharmGKB ID	PA31018

Target gene [MRPS30] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6000117	chr5	3346	525	449	4320	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of MRPS30 expression and immune infiltrating cell level correlation result in HTLV1+ samples
MRPS30 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of MRPS30 expression and immune infiltrating cell level correlation result in HTLV1+ samples
MRPS30 expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of MRPS30 expression and immune infiltrating cell level correlation result in HTLV1+ samples
MRPS30 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).