HPV Target gene Detail Information

> MIR563 Gene Search Result

Gene Information

Gene Name	MIR563
Gene ID	693148
Gene Full Name	microRNA 563
Gene Alias	MIRN563; hsa-mir-563
Transcripts	ENSG00000207815
Virus	HPV
Gene Type	ncRNA
HPA Location Info
HGNC ID	HGNC:32819
Rfam ID	RF01003
PharmGKB ID	PA164722861
miRBase ID	MI0003569
miRBase Name	hsa-mir-563

Target gene [MIR563] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5404737	chr3	59	50		109	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE140662 (GEO)	Condyloma Acuminatum	8	Condyloma acuminata (HPV+)(5), Skin(3)
GSE51993 (GEO)	Cervical intraepithelial neoplasia	24	Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)

> Dataset: GSE140662
HeatMap of cell type fractions in all samples	Lollipop of MIR563 expression and immune infiltrating cell level correlation result in HPV+ samples
MIR563 expression: Low -> High

> Dataset: GSE51993
HeatMap of cell type fractions in all samples	Lollipop of MIR563 expression and immune infiltrating cell level correlation result in HPV+ samples
MIR563 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).