HPV Target gene Detail Information

> MIR548M Gene Search Result

Gene Information

Gene Name	MIR548M
Gene ID	100313772
Gene Alias	MIRN548M
Transcripts	ENSG00000221187
Virus	HPV
Gene Type	ncRNA
HPA Location Info
HGNC ID	HGNC:35331
PharmGKB ID	PA164722842
miRBase ID	MI0006400
miRBase Name	hsa-mir-548m

Target gene [MIR548M] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5201171	chrX	1	3		4	View
5201582	chrX	2	1		3	View
5403606	chrX				0	View
5403918	chrX	2			2	View
5403991	chrX				0	View
5404874	chrX	1			1	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE140662 (GEO)	Condyloma Acuminatum	8	Condyloma acuminata (HPV+)(5), Skin(3)
GSE51993 (GEO)	Cervical intraepithelial neoplasia	24	Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)

> Dataset: GSE140662
HeatMap of cell type fractions in all samples	Lollipop of MIR548M expression and immune infiltrating cell level correlation result in HPV+ samples
MIR548M expression: Low -> High

> Dataset: GSE51993
HeatMap of cell type fractions in all samples	Lollipop of MIR548M expression and immune infiltrating cell level correlation result in HPV+ samples
MIR548M expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).