HTLV1 Target gene Detail Information

> MEF2C Gene Search Result

Gene Information

Gene Name	MEF2C
Gene ID	4208
Gene Full Name	myocyte enhancer factor 2C
Gene Alias	DEL5q14.3; C5DELq14.3
Transcripts	ENSG00000081189
Virus	HTLV1
Gene Type	protein coding
HPA Location Info	Nucleoplasm;Vesicles;
HPA Protein Class Info	Disease related genes, Predicted intracellular proteins, Transcription factors
Gene Function	Oncogene
Uniport_ID	Q06413
HGNC ID	HGNC:6996
VEGA ID	OTTHUMG00000162634
OMIM ID	600662
String ID	9606.ENSP00000340874
PharmGKB ID	PA30734

Target gene [MEF2C] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6007723	chr5	31	7	14	52	View
6017896	chr5	2	5	3	10	View
6017897	chr5	2	5	3	10	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of MEF2C expression and immune infiltrating cell level correlation result in HTLV1+ samples
MEF2C expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of MEF2C expression and immune infiltrating cell level correlation result in HTLV1+ samples
MEF2C expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of MEF2C expression and immune infiltrating cell level correlation result in HTLV1+ samples
MEF2C expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).