HIV Target gene Detail Information

> MALAT1 Gene Search Result

Gene Information

Gene Name	MALAT1
Gene ID	378938
Gene Alias	HCN; NEAT2; PRO2853; LINC00047; NCRNA00047
Transcripts	ENSG00000251562
Virus	HIV
Gene Type	ncRNA
HPA Location Info
Gene Function	Oncogene
HGNC ID	HGNC:29665
VEGA ID	OTTHUMG00000166322
OMIM ID	607924
Rfam ID	RF01871
lncRNASNP2 ID	NONHSAG008675.2
PharmGKB ID	PA134935778

Target gene [MALAT1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000249	chr11	526	118		644	View
4000459	chr11	423	26		449	View
4000719	chr11	291	14		305	View
4001242	chr11	181	7		188	View
4001461	chr11	161			161	View
4001470	chr11	160			160	View
4001752	chr11	134			134	View
4001777	chr11	117	16		133	View
4002094	chr11	108	4		112	View
4002133	chr11	79	31		110	View
4002213	chr11	105			105	View
4002362	chr11	91	5	2	98	View
4004139	chr11	35	13		48	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of MALAT1 expression and immune infiltrating cell level correlation result in HIV+ samples
MALAT1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).