HIV Target gene Detail Information

> MALAT1 Gene Search Result


Gene Information
Gene Name MALAT1
Gene ID 378938
Gene Alias HCN; NEAT2; PRO2853; LINC00047; NCRNA00047
Transcripts ENSG00000251562
Virus HIV
Gene Type ncRNA
HPA Location Info
Gene Function Oncogene
HGNC ID HGNC:29665
VEGA ID OTTHUMG00000166322
OMIM ID 607924
Rfam ID RF01871
lncRNASNP2 ID NONHSAG008675.2
PharmGKB ID PA134935778
Target gene [MALAT1] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000249 chr11 526 118 644 View
4000459 chr11 423 26 449 View
4000719 chr11 291 14 305 View
4001242 chr11 181 7 188 View
4001461 chr11 161 161 View
4001470 chr11 160 160 View
4001752 chr11 134 134 View
4001777 chr11 117 16 133 View
4002094 chr11 108 4 112 View
4002133 chr11 79 31 110 View
4002213 chr11 105 105 View
4002362 chr11 91 5 2 98 View
4004139 chr11 35 13 48 View

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).