HTLV1 Target gene Detail Information

> LYSMD4 Gene Search Result

Gene Information

Gene Name	LYSMD4
Gene ID	145748
Gene Full Name	LysM domain containing 4
Transcripts	ENSG00000183060
Virus	HTLV1
Gene Type	protein coding
HPA Location Info	Cytosol;Actin filaments;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	Q5XG99
HGNC ID	HGNC:26571
VEGA ID	OTTHUMG00000149853
String ID	9606.ENSP00000342840
PharmGKB ID	PA142671496

Target gene [LYSMD4] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6000093	chr15	3455	803	640	4898	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of LYSMD4 expression and immune infiltrating cell level correlation result in HTLV1+ samples
LYSMD4 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of LYSMD4 expression and immune infiltrating cell level correlation result in HTLV1+ samples
LYSMD4 expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of LYSMD4 expression and immune infiltrating cell level correlation result in HTLV1+ samples
LYSMD4 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).