HIV Target gene Detail Information

> LY9 Gene Search Result

Gene Information

Gene Name	LY9
Gene ID	4063
Gene Full Name	lymphocyte antigen 9
Gene Alias	hly9; mLY9; CD229; SLAMF3
Transcripts	ENSG00000122224
Virus	HIV
Gene Type	protein coding
HPA Location Info
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	CD markers, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	Q9HBG7
HGNC ID	HGNC:6730
VEGA ID	OTTHUMG00000024007
OMIM ID	600684
String ID	9606.ENSP00000263285
PharmGKB ID	PA30494

Target gene [LY9] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4002121	chr1	93	18	1	112	View
4002540	chr1	11	30	49	90	View
4003248	chr1	55	10		65	View
4015573	chr1		1		1	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of LY9 expression and immune infiltrating cell level correlation result in HIV+ samples
LY9 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of LY9 expression and immune infiltrating cell level correlation result in HIV+ samples
LY9 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).