HIV Target gene Detail Information

> LSM2 Gene Search Result


Gene Information
Gene Name LSM2
Gene ID 57819
Gene Full Name LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
Gene Alias G7B; snRNP; C6orf28; YBL026W
Transcripts ENSG00000236826
Virus HIV
Gene Type protein coding
HPA Location Info Nucleoplasm;
HPA Protein Class Info Plasma proteins, Predicted intracellular proteins
Uniport_ID Q9Y333
HGNC ID HGNC:13940
VEGA ID OTTHUMG00000149939
OMIM ID 607282
String ID 9606.ENSP00000364813
PharmGKB ID PA25929
Target gene [LSM2] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4013217 chr6 2 2 4 View

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).