HTLV1 Target gene Detail Information

> LRRIQ3 Gene Search Result


Gene Information
Gene Name LRRIQ3
Gene ID 127255
Gene Full Name leucine rich repeats and IQ motif containing 3
Gene Alias LRRC44
Transcripts ENSG00000162620
Virus HTLV1
Gene Type protein coding
HPA Location Info Plasma membrane;Nucleoplasm;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID A6PVS8
HGNC ID HGNC:28318
VEGA ID OTTHUMG00000009508
OMIM ID 617957
String ID 9606.ENSP00000346414
PharmGKB ID PA162394627
Target gene [LRRIQ3] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6026496 chr1 2 2 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE55851 (GEO) Adult T-cell leukemia 21 Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)

> Dataset: GSE55851

HeatMap of cell type fractions in all samples Lollipop of LRRIQ3 expression and immune infiltrating cell level correlation result in HTLV1+ samples
LRRIQ3 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).