HTLV1 Target gene Detail Information

> LRRC43 Gene Search Result

Gene Information

Gene Name	LRRC43
Gene ID	254050
Gene Full Name	leucine rich repeat containing 43
Transcripts	ENSG00000158113
Virus	HTLV1
Gene Type	protein coding
HPA Location Info	Golgi apparatus;Vesicles;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q8N309
HGNC ID	HGNC:28562
VEGA ID	OTTHUMG00000168915
String ID	9606.ENSP00000344233
PharmGKB ID	PA142671531

Target gene [LRRC43] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6006884	chr12	62			62	View
6008199	chr12	20	25	2	47	View
6021139	chr12	6			6	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of LRRC43 expression and immune infiltrating cell level correlation result in HTLV1+ samples
LRRC43 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of LRRC43 expression and immune infiltrating cell level correlation result in HTLV1+ samples
LRRC43 expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of LRRC43 expression and immune infiltrating cell level correlation result in HTLV1+ samples
LRRC43 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).