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EBV Target gene Detail Information

> LOC647070 Gene Search Result


Gene Information
Gene Name LOC647070
Gene ID 647070
Gene Full Name uncharacterized LOC647070
Virus EBV
Gene Type ncRNA
Target gene [LOC647070] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
3000280 chr1 30 12 42 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE42867 (GEO) Burkitt lymphoma 12 Burkitt lymphoma cell line Awia (EBV+)(12)
GSE135644 (GEO) Gastric carcinoma 10 Gastric adenocarcinoma cell line AGS (5), Gastric adenocarcinoma cell line AGS (EBV+)(5)
GSE45919 (GEO) Infectious mononucleosis 24 Infectious mononucleosis (IM)(EBV+)(3), Normal (9), Latent EBV (12)
GSE58240 (GEO) Multiple sclerosis 32 Multiple sclerosis IFN-β treated (EBV+)(16), Multiple sclerosis untreated (EBV+)(16)
GSE12452 (GEO) Nasopharyngeal carcinoma 41 Nasopharyngeal carcinoma (EBV+)(31), Normal(10)

> Dataset: GSE42867

HeatMap of cell type fractions in all samples Lollipop of LOC647070 expression and immune infiltrating cell level correlation result in EBV+ samples
LOC647070 expression: Low -> High

> Dataset: GSE135644

HeatMap of cell type fractions in all samples Lollipop of LOC647070 expression and immune infiltrating cell level correlation result in EBV+ samples
LOC647070 expression: Low -> High

> Dataset: GSE45919

HeatMap of cell type fractions in all samples Lollipop of LOC647070 expression and immune infiltrating cell level correlation result in EBV+ samples
LOC647070 expression: Low -> High

> Dataset: GSE58240

HeatMap of cell type fractions in all samples Lollipop of LOC647070 expression and immune infiltrating cell level correlation result in EBV+ samples
LOC647070 expression: Low -> High

> Dataset: GSE12452

HeatMap of cell type fractions in all samples Lollipop of LOC647070 expression and immune infiltrating cell level correlation result in EBV+ samples
LOC647070 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).