HTLV1 Target gene Detail Information

> LOC646588 Gene Search Result

Gene Information

Gene Name	LOC646588
Gene ID	646588
Gene Full Name	uncharacterized LOC646588
Transcripts	ENSG00000223561
Virus	HTLV1
Gene Type	ncRNA
HPA Location Info

Target gene [LOC646588] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6006927	chr7	45	4	12	61	View
6016994	chr7	11			11	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of LOC646588 expression and immune infiltrating cell level correlation result in HTLV1+ samples
LOC646588 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of LOC646588 expression and immune infiltrating cell level correlation result in HTLV1+ samples
LOC646588 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).