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HBV Target gene Detail Information

> LOC643339 Gene Search Result


Gene Information
Gene Name LOC643339
Gene ID 643339
Gene Full Name uncharacterized LOC643339
Virus HBV
Gene Type ncRNA
Target gene [LOC643339] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1014254 chr12 4 4 View
1404435 chr12 6 1 7 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of LOC643339 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
LOC643339 expression: Low -> High
Lollipop of LOC643339 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of LOC643339 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).