HTLV1 Target gene Detail Information

> LOC442028 Gene Search Result

Gene Information

Gene Name	LOC442028
Gene ID	442028
Gene Full Name	uncharacterized LOC442028
Transcripts	ENSG00000259848
Virus	HTLV1
Gene Type	ncRNA
HPA Location Info

Target gene [LOC442028] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6008852	chr2	41			41	View
6011084	chr2	23	5		28	View
6017119	chr2	9	2		11	View
6028557	chr2	1			1	View
6032471	chr2				0	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of LOC442028 expression and immune infiltrating cell level correlation result in HTLV1+ samples
LOC442028 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).