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HPV Target gene Detail Information

> LOC441666 Gene Search Result


Gene Information
Gene Name LOC441666
Gene ID 441666
Gene Full Name zinc finger protein 91 pseudogene
Transcripts ENSG00000215146
Virus HPV
Gene Type pseudo
HPA Location Info
Target gene [LOC441666] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5201757 chr10 23 4 4 31 View
5402519 chr10 8 8 View
5402538 chr10 23 23 View
5402578 chr10 4 4 View
5403382 chr10 195 195 View
5403597 chr10 1152 768 597 2517 View
5403634 chr10 9 9 View
5403670 chr10 1 1 2 View
5403712 chr10 50 3 53 View
5403752 chr10 2 2 View
5404369 chr10 73 1 74 View
5404664 chr10 6349 7348 1669 15366 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE140662 (GEO) Condyloma Acuminatum 8 Condyloma acuminata (HPV+)(5), Skin(3)
GSE55546 (GEO) Oropharyngeal squamous cell carcinoma 16 Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO) Oropharyngeal squamous cell carcinoma 23 Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO) Oropharyngeal squamous cell carcinoma 36 Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)
GSE138080 (GEO) Cervical intraepithelial neoplasia 25 Normal (10), Cervical intraepithelial neoplasia (HPV+)(15)
GSE51993 (GEO) Cervical intraepithelial neoplasia 24 Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)
HNSC (TCGA) Head and Neck squamous cell carcinoma 566 Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE140662

HeatMap of cell type fractions in all samples Lollipop of LOC441666 expression and immune infiltrating cell level correlation result in HPV+ samples
LOC441666 expression: Low -> High

> Dataset: GSE55546

HeatMap of cell type fractions in all samples Lollipop of LOC441666 expression and immune infiltrating cell level correlation result in HPV+ samples
LOC441666 expression: Low -> High

> Dataset: GSE55544

HeatMap of cell type fractions in all samples Lollipop of LOC441666 expression and immune infiltrating cell level correlation result in HPV+ samples
LOC441666 expression: Low -> High

> Dataset: GSE55542

HeatMap of cell type fractions in all samples Lollipop of LOC441666 expression and immune infiltrating cell level correlation result in HPV+ samples
LOC441666 expression: Low -> High

> Dataset: GSE138080

HeatMap of cell type fractions in all samples Lollipop of LOC441666 expression and immune infiltrating cell level correlation result in HPV+ samples
LOC441666 expression: Low -> High

> Dataset: GSE51993

HeatMap of cell type fractions in all samples Lollipop of LOC441666 expression and immune infiltrating cell level correlation result in HPV+ samples
LOC441666 expression: Low -> High

> Dataset: HNSC

HeatMap of cell type fractions in all samples Lollipop of LOC441666 expression and immune infiltrating cell level correlation result in HPV+ samples
LOC441666 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).