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HBV Target gene Detail Information

> LOC400499 Gene Search Result


Gene Information
Gene Name LOC400499
Gene ID 400499
Gene Full Name putative uncharacterized protein LOC400499
Transcripts ENSG00000188897
Virus HBV
Gene Type protein coding
HPA Location Info
Target gene [LOC400499] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1015785 chr16 2 2 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of LOC400499 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
LOC400499 expression: Low -> High
Lollipop of LOC400499 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of LOC400499 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).