HPV Target gene Detail Information

> LOC392232 Gene Search Result

Gene Information

Gene Name	LOC392232
Gene ID	392232
Gene Full Name	transient receptor potential cation channel subfamily A member 1 pseudogene
Virus	HPV
Gene Type	pseudo

Target gene [LOC392232] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5201553	chr8	2	23		25	View
5404635	chr8				0	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE140662 (GEO)	Condyloma Acuminatum	8	Condyloma acuminata (HPV+)(5), Skin(3)
GSE51993 (GEO)	Cervical intraepithelial neoplasia	24	Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)

> Dataset: GSE140662
HeatMap of cell type fractions in all samples	Lollipop of LOC392232 expression and immune infiltrating cell level correlation result in HPV+ samples
LOC392232 expression: Low -> High

> Dataset: GSE51993
HeatMap of cell type fractions in all samples	Lollipop of LOC392232 expression and immune infiltrating cell level correlation result in HPV+ samples
LOC392232 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).