HTLV1 Target gene Detail Information

> LOC285638 Gene Search Result


Gene Information
Gene Name LOC285638
Gene ID 285638
Gene Full Name uncharacterized LOC285638
Transcripts ENSG00000249476
Virus HTLV1
Gene Type ncRNA
HPA Location Info
Target gene [LOC285638] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6024848 chr5 3 3 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE55851 (GEO) Adult T-cell leukemia 21 Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)

> Dataset: GSE55851

HeatMap of cell type fractions in all samples Lollipop of LOC285638 expression and immune infiltrating cell level correlation result in HTLV1+ samples
LOC285638 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).