HIV Target gene Detail Information

> LMX1A Gene Search Result

Gene Information

Gene Name	LMX1A
Gene ID	4009
Gene Full Name	LIM homeobox transcription factor 1 alpha
Gene Alias	LMX1; LMX1.1
Transcripts	ENSG00000162761
Virus	HIV
Gene Type	protein coding
HPA Location Info	Golgi apparatus;Nucleoplasm;Vesicles;
HPA Protein Class Info	Predicted intracellular proteins, Transcription factors
Uniport_ID	Q8TE12
HGNC ID	HGNC:6653
VEGA ID	OTTHUMG00000034575
OMIM ID	600298
String ID	9606.ENSP00000340226
PharmGKB ID	PA30416

Target gene [LMX1A] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4008384	chr1	15			15	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of LMX1A expression and immune infiltrating cell level correlation result in HIV+ samples
LMX1A expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).