HPV Target gene Detail Information

> LINC00954 Gene Search Result

Gene Information

Gene Name	LINC00954
Gene ID	400946
Transcripts	ENSG00000228784
Virus	HPV
Gene Type	ncRNA
HPA Location Info
HGNC ID	HGNC:48668
lncRNASNP2 ID	NONHSAG027140.2

Target gene [LINC00954] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5201657	chr2	10			10	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE140662 (GEO)	Condyloma Acuminatum	8	Condyloma acuminata (HPV+)(5), Skin(3)

> Dataset: GSE140662
HeatMap of cell type fractions in all samples	Lollipop of LINC00954 expression and immune infiltrating cell level correlation result in HPV+ samples
LINC00954 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).