HIV Target gene Detail Information

> LINC00907 Gene Search Result


Gene Information
Gene Name LINC00907
Gene ID 284260
Transcripts ENSG00000267586
Virus HIV
Gene Type ncRNA
HPA Location Info
HGNC ID HGNC:44327
lncRNASNP2 ID NONHSAG023752.2
Target gene [LINC00907] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4014723 chr18 2 2 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of LINC00907 expression and immune infiltrating cell level correlation result in HIV+ samples
LINC00907 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).