HPV Target gene Detail Information

> LINC00662 Gene Search Result


Gene Information
Gene Name LINC00662
Gene ID 148189
Transcripts ENSG00000261824
Virus HPV
Gene Type ncRNA
HPA Location Info
HGNC ID HGNC:27122
lncRNASNP2 ID NONHSAG025376.2
Target gene [LINC00662] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5200673 chr19 0 View
5201471 chr19 0 View
5201508 chr19 10 10 View
5402585 chr19 51 1 52 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE140662 (GEO) Condyloma Acuminatum 8 Condyloma acuminata (HPV+)(5), Skin(3)

> Dataset: GSE140662

HeatMap of cell type fractions in all samples Lollipop of LINC00662 expression and immune infiltrating cell level correlation result in HPV+ samples
LINC00662 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).