HPV Target gene Detail Information

> LINC00550 Gene Search Result

Gene Information

Gene Name	LINC00550
Gene ID	338862
Transcripts	ENSG00000281778
Virus	HPV
Gene Type	ncRNA
HPA Location Info
HGNC ID	HGNC:43688
VEGA ID	OTTHUMG00000189544
lncRNASNP2 ID	NONHSAG013721.2

Target gene [LINC00550] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5200356	chr13	2			2	View
5200926	chr13	43	26	2	71	View
5201344	chr13	1	11		12	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE140662 (GEO)	Condyloma Acuminatum	8	Condyloma acuminata (HPV+)(5), Skin(3)

> Dataset: GSE140662
HeatMap of cell type fractions in all samples	Lollipop of LINC00550 expression and immune infiltrating cell level correlation result in HPV+ samples
LINC00550 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).