HPV Target gene Detail Information

> LINC00488 Gene Search Result

Gene Information

Gene Name	LINC00488
Gene ID	677779
Gene Full Name	long intergenic non-protein coding RNA 488
Gene Alias	C3orf66
Transcripts	ENSG00000214381
Virus	HPV
Gene Type	ncRNA
HPA Location Info
HGNC ID	HGNC:32675
lncRNASNP2 ID	NONHSAG035701.2
PharmGKB ID	PA144596508

Target gene [LINC00488] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5405004	chr3	13	4	3	20	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE140662 (GEO)	Condyloma Acuminatum	8	Condyloma acuminata (HPV+)(5), Skin(3)
GSE55546 (GEO)	Oropharyngeal squamous cell carcinoma	16	Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO)	Oropharyngeal squamous cell carcinoma	23	Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO)	Oropharyngeal squamous cell carcinoma	36	Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)

> Dataset: GSE140662
HeatMap of cell type fractions in all samples	Lollipop of LINC00488 expression and immune infiltrating cell level correlation result in HPV+ samples
LINC00488 expression: Low -> High

> Dataset: GSE55546
HeatMap of cell type fractions in all samples	Lollipop of LINC00488 expression and immune infiltrating cell level correlation result in HPV+ samples
LINC00488 expression: Low -> High

> Dataset: GSE55544
HeatMap of cell type fractions in all samples	Lollipop of LINC00488 expression and immune infiltrating cell level correlation result in HPV+ samples
LINC00488 expression: Low -> High

> Dataset: GSE55542
HeatMap of cell type fractions in all samples	Lollipop of LINC00488 expression and immune infiltrating cell level correlation result in HPV+ samples
LINC00488 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).