HPV Target gene Detail Information

> LINC00392 Gene Search Result


Gene Information
Gene Name LINC00392
Gene ID 100874155
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:42720
lncRNASNP2 ID NONHSAG013763.2
Target gene [LINC00392] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5200029 chr13 1 1 1 3 View
5200044 chr13 9 5 14 View
5201237 chr13 19 2 21 View
5201904 chr13 9 5 14 View
5201920 chr13 9 5 14 View
5402988 chr13 7 7 View
5404892 chr13 7 4 11 View
5404918 chr13 7 4 11 View
5404927 chr13 5 25 2 32 View
5404987 chr13 5 12 1 18 View
5404990 chr13 5 26 2 33 View
5404991 chr13 5 13 1 19 View
5404992 chr13 5 12 1 18 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE140662 (GEO) Condyloma Acuminatum 8 Condyloma acuminata (HPV+)(5), Skin(3)

> Dataset: GSE140662

HeatMap of cell type fractions in all samples Lollipop of LINC00392 expression and immune infiltrating cell level correlation result in HPV+ samples
LINC00392 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).