HIV Target gene Detail Information

> LINC00271 Gene Search Result

Gene Information

Gene Name	LINC00271
Gene ID	100131814
Gene Alias	C6orf217; NCRNA00271
Transcripts	ENSG00000231028
Virus	HIV
Gene Type	ncRNA
HPA Location Info
HGNC ID	HGNC:32526
VEGA ID	OTTHUMG00000015632
lncRNASNP2 ID	NONHSAG044916.2
PharmGKB ID	PA165618181

Target gene [LINC00271] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4005179	chr6	22	13		35	View
4010342	chr6	9			9	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of LINC00271 expression and immune infiltrating cell level correlation result in HIV+ samples
LINC00271 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).