HPV Target gene Detail Information

> LINC00111 Gene Search Result

Gene Information

Gene Name	LINC00111
Gene ID	54090
Gene Alias	C21orf21; NCRNA00111
Virus	HPV
Gene Type	ncRNA
HGNC ID	HGNC:1262
lncRNASNP2 ID	NONHSAG032914.2
PharmGKB ID	PA164723658

Target gene [LINC00111] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5000354	chr21	260	15	4	279	View
5000592	chr21	32	94		126	View
5000613	chr21	29	91		120	View
5001628	chr21	23	3	1	27	View
5001629	chr21	24	3		27	View
5002064	chr21	13	3	1	17	View
5002417	chr21	11	1		12	View
5003224	chr21	2	3		5	View
5004695	chr21				0	View
5402609	chr21				0	View
5402610	chr21	31	95		126	View
5402611	chr21	170	131	39	340	View
5402612	chr21	2	8		10	View
5402613	chr21	261	15	4	280	View
5402614	chr21	5	4		9	View
5402615	chr21	10	8	1	19	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE140662 (GEO)	Condyloma Acuminatum	8	Condyloma acuminata (HPV+)(5), Skin(3)
GSE55546 (GEO)	Oropharyngeal squamous cell carcinoma	16	Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO)	Oropharyngeal squamous cell carcinoma	23	Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO)	Oropharyngeal squamous cell carcinoma	36	Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)

> Dataset: GSE140662
HeatMap of cell type fractions in all samples	Lollipop of LINC00111 expression and immune infiltrating cell level correlation result in HPV+ samples
LINC00111 expression: Low -> High

> Dataset: GSE55546
HeatMap of cell type fractions in all samples	Lollipop of LINC00111 expression and immune infiltrating cell level correlation result in HPV+ samples
LINC00111 expression: Low -> High

> Dataset: GSE55544
HeatMap of cell type fractions in all samples	Lollipop of LINC00111 expression and immune infiltrating cell level correlation result in HPV+ samples
LINC00111 expression: Low -> High

> Dataset: GSE55542
HeatMap of cell type fractions in all samples	Lollipop of LINC00111 expression and immune infiltrating cell level correlation result in HPV+ samples
LINC00111 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).