HTLV1 Target gene Detail Information

> LIMCH1 Gene Search Result

Gene Information

Gene Name	LIMCH1
Gene ID	22998
Gene Full Name	LIM and calponin homology domains 1
Gene Alias	LMO7B; LIMCH1A
Transcripts	ENSG00000064042
Virus	HTLV1
Gene Type	protein coding
HPA Location Info	Actin filaments;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q9UPQ0
HGNC ID	HGNC:29191
VEGA ID	OTTHUMG00000160575
OMIM ID	617750
String ID	9606.ENSP00000316891
PharmGKB ID	PA162393957

Target gene [LIMCH1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6017040	chr4	7	1	3	11	View
6018706	chr4	5	1	3	9	View
6019423	chr4	4	1	3	8	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of LIMCH1 expression and immune infiltrating cell level correlation result in HTLV1+ samples
LIMCH1 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of LIMCH1 expression and immune infiltrating cell level correlation result in HTLV1+ samples
LIMCH1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).