HPV Target gene Detail Information

> L1CAM Gene Search Result

Gene Information

Gene Name	L1CAM
Gene ID	3897
Gene Full Name	L1 cell adhesion molecule
Gene Alias	S10; HSAS; MASA; MIC5; SPG1; CAML1; CD171; HSAS1; N-CAML1; NCAM-L1; N-CAM-L1
Transcripts	ENSG00000198910
Virus	HPV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;Plasma membrane;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	CD markers, Disease related genes, Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	P32004
HGNC ID	HGNC:6470
VEGA ID	OTTHUMG00000024221
OMIM ID	308840
String ID	9606.ENSP00000359077
Drugbank ID	BE0008924
PharmGKB ID	PA30259

Target gene [L1CAM] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5201496	chrX	23		13	36	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE140662 (GEO)	Condyloma Acuminatum	8	Condyloma acuminata (HPV+)(5), Skin(3)
GSE65858 (GEO)	Head and neck squamous cell carcinoma	270	Head and neck squamous cell carcinoma (EBV+)(73), Head and neck squamous cell carcinoma (EBV-)(197)
GSE55546 (GEO)	Oropharyngeal squamous cell carcinoma	16	Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO)	Oropharyngeal squamous cell carcinoma	23	Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO)	Oropharyngeal squamous cell carcinoma	36	Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)
GSE51993 (GEO)	Cervical intraepithelial neoplasia	24	Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)
HNSC (TCGA)	Head and Neck squamous cell carcinoma	566	Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE140662
HeatMap of cell type fractions in all samples	Lollipop of L1CAM expression and immune infiltrating cell level correlation result in HPV+ samples
L1CAM expression: Low -> High

> Dataset: GSE65858
HeatMap of cell type fractions in all samples	Lollipop of L1CAM expression and immune infiltrating cell level correlation result in HPV+ samples
L1CAM expression: Low -> High

> Dataset: GSE55546
HeatMap of cell type fractions in all samples	Lollipop of L1CAM expression and immune infiltrating cell level correlation result in HPV+ samples
L1CAM expression: Low -> High

> Dataset: GSE55544
HeatMap of cell type fractions in all samples	Lollipop of L1CAM expression and immune infiltrating cell level correlation result in HPV+ samples
L1CAM expression: Low -> High

> Dataset: GSE55542
HeatMap of cell type fractions in all samples	Lollipop of L1CAM expression and immune infiltrating cell level correlation result in HPV+ samples
L1CAM expression: Low -> High

> Dataset: GSE51993
HeatMap of cell type fractions in all samples	Lollipop of L1CAM expression and immune infiltrating cell level correlation result in HPV+ samples
L1CAM expression: Low -> High

> Dataset: HNSC
HeatMap of cell type fractions in all samples	Lollipop of L1CAM expression and immune infiltrating cell level correlation result in HPV+ samples
L1CAM expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).

> Dataset: GSE140662