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HIV Target gene Detail Information

> KDM2A Gene Search Result


Gene Information
Gene Name KDM2A
Gene ID 22992
Gene Full Name lysine demethylase 2A
Gene Alias FBL7; CXXC8; FBL11; FBXL11; JHDM1A; LILINA
Transcripts ENSG00000173120
Virus HIV
Gene Type protein coding
HPA Location Info Nucleoplasm;
HPA Protein Class Info Enzymes, Plasma proteins, Predicted intracellular proteins, Transcription factors
Gene Function Oncogene
Uniport_ID Q9Y2K7
HGNC ID HGNC:13606
VEGA ID OTTHUMG00000167103
OMIM ID 605657
String ID 9606.ENSP00000432786
PharmGKB ID PA164721195
Target gene [KDM2A] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4001813 chr11 106 22 2 130 View
4002161 chr11 105 4 109 View
4002261 chr11 101 1 102 View
4002414 chr11 92 3 95 View
4002626 chr11 81 5 86 View
4003107 chr11 7 4 58 69 View
4004399 chr11 40 5 45 View
4004794 chr11 37 2 39 View
4004836 chr11 28 11 39 View
4004944 chr11 34 2 1 37 View
4004988 chr11 35 1 1 37 View
4004998 chr11 36 1 37 View
4005733 chr11 29 1 30 View
4005850 chr11 28 1 29 View
4006982 chr11 20 1 21 View
4007017 chr11 20 1 21 View
4007376 chr11 18 1 19 View
4007483 chr11 18 1 19 View
4007492 chr11 16 2 1 19 View
4007962 chr11 12 5 17 View
4008131 chr11 10 5 1 16 View
4008660 chr11 12 2 14 View
4008897 chr11 13 13 View
4008916 chr11 5 5 3 13 View
4009520 chr11 8 3 11 View
4010175 chr11 9 9 View
4010271 chr11 8 1 9 View
4010545 chr11 8 8 View
4010546 chr11 5 3 8 View
4011126 chr11 6 1 7 View
4011872 chr11 4 2 6 View
4012049 chr11 4 1 5 View
4012389 chr11 3 2 5 View
4012437 chr11 4 1 5 View
4012862 chr11 4 4 View
4012863 chr11 4 4 View
4013969 chr11 2 1 3 View
4014336 chr11 2 2 View
4014827 chr11 1 1 2 View
4016170 chr11 0 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of KDM2A expression and immune infiltrating cell level correlation result in HIV+ samples
KDM2A expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).