Home
Virus
Gene
Disease
Dataset
Download
Help
 
HTLV1 Target gene Detail Information

> IFFO2 Gene Search Result


Gene Information
Gene Name IFFO2
Gene ID 126917
Gene Full Name intermediate filament family orphan 2
Transcripts ENSG00000169991
Virus HTLV1
Gene Type protein coding
HPA Location Info Nucleoplasm;Plasma membrane;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q5TF58
HGNC ID HGNC:27006
VEGA ID OTTHUMG00000002499
String ID 9606.ENSP00000387941
PharmGKB ID PA164720824
Target gene [IFFO2] related to VISs
DVIDChromosomeHMTFBSCASum of Overlapped RecordsDetail
6001404 chr1 26 102 321 449 View
6005276 chr1 50 28 13 91 View
Showing 1 to 2 of 2 entries
FirstPrevious1NextLast

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE55851 (GEO) Adult T-cell leukemia 21 Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)

> Dataset: GSE55851

HeatMap of cell type fractions in all samples Lollipop of IFFO2 expression and immune infiltrating cell level correlation result in HTLV1+ samples
IFFO2 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).